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rna-seq by expectation-maximization (rsem) software  (Unigene)

 
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    Structured Review

    Unigene rna-seq by expectation-maximization (rsem) software
    Rna Seq By Expectation Maximization (Rsem) Software, supplied by Unigene, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/rna-seq+by+expectation-maximization+(rsem)+software/rna+seq/pm34958106-68-13-4
    Average 90 stars, based on 1 article reviews
    rna-seq by expectation-maximization (rsem) software - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    other:

    Article Title: Weeping candidate genes screened using comparative transcriptomic analysis of weeping and upright progeny in an F1 population of Prunus mume
    Article Snippet: The expression level of each unigene was measured as FPKM (fragments per kilobase per million reads) by RSEM (RNA‐Seq by Expectation Maximization) software (Li and Dewey ).

    Article Title: Transcriptomics profile reveals the temporal molecular events triggered by cut-wounding in stem-ends of cut ‘Tiber’ lily flowers
    Article Snippet: Plants are prone to wounding by various means, which mainly occur with exposure to environmental mechanical stimuli or via herbivory.. The plant wounding response is believed to be mediated by potential molecular mechanisms.. However, the wounding response and its molecular mechanism in cut flowers, which are severely wounded plant tissues, have been poorly studied.

    Software:

    Article Title: Transcriptomic characterization and potential marker development of contrasting sugarcane cultivars.
    Article Snippet: .. The unigene abundance was normalized using Reads Per Kilobase of exon model per Million mapped reads (FPKM) with RSEM software (RNA-seq by Expectation Maximization, http:// deweylab. biostat.wisc.edu/rsem/)57. ..

    Article Title: Transcriptomic characterization and potential marker development of contrasting sugarcane cultivars
    Article Snippet: .. The unigene abundance was normalized using Reads Per Kilobase of exon model per Million mapped reads (FPKM) with RSEM software (RNA-seq by Expectation Maximization, http://deweylab. biostat.wisc.edu/rsem/) . ..

    Article Title: The Regulation of Adaptation to Cold and Drought Stresses in Poa crymophila Keng Revealed by Integrative Transcriptomics and Metabolomics Analysis
    Article Snippet: .. Unigene expression levels were calculated in terms of the fragments per kilobase of exon model per million (FPKM) using the software package RSEM (RNA-Seq by Expectation Maximization) (Li and Dewey, ). ..

    Article Title: Transcriptome profiling of the meristem tissue of Saccharina japonica (Phaeophyceae, Laminariales) under severe stress of copper.
    Article Snippet: Copper (Cu) is an essential metal involved in many physiological processes of living organisms.. However, beyond a certain threshold, Cu can become highly toxic.. For instance, in the summer sporeling production of the economic kelp Saccharina japonica, the excess Cu accidently released from the low-quality alloys of the refrigerating machine was deadly to the seedlings and led to the failure of hatchery operations.

    Article Title: The antennal transcriptome analysis and characterizations of odorant-binding proteins in Megachile saussurei (Hymenoptera, Megachilidae).
    Article Snippet: .. The expression level of each unigene was calculated by RSEM software (RNA-Seq by Expectation Maximization) with default parameters and presented as FPKM (fragments per kilobase of transcript per million mapped fragments) values. ..

    Article Title: De novo transcriptome assembly for the tropical grass Panicum maximum Jacq.
    Article Snippet: .. Abundance Estimation RSEM (RNA-Seq by Expectation Maximization) software [30] was used to estimate the unigene FPKM values (fragments per kilobase of transcript per million mapped reads) based on read abundance using the Bowtie [25] aligner. ..

    RNA Sequencing:

    Article Title: Transcriptomic characterization and potential marker development of contrasting sugarcane cultivars.
    Article Snippet: .. The unigene abundance was normalized using Reads Per Kilobase of exon model per Million mapped reads (FPKM) with RSEM software (RNA-seq by Expectation Maximization, http:// deweylab. biostat.wisc.edu/rsem/)57. ..

    Article Title: Transcriptomic characterization and potential marker development of contrasting sugarcane cultivars
    Article Snippet: .. The unigene abundance was normalized using Reads Per Kilobase of exon model per Million mapped reads (FPKM) with RSEM software (RNA-seq by Expectation Maximization, http://deweylab. biostat.wisc.edu/rsem/) . ..

    Expressing:

    Article Title: The Regulation of Adaptation to Cold and Drought Stresses in Poa crymophila Keng Revealed by Integrative Transcriptomics and Metabolomics Analysis
    Article Snippet: .. Unigene expression levels were calculated in terms of the fragments per kilobase of exon model per million (FPKM) using the software package RSEM (RNA-Seq by Expectation Maximization) (Li and Dewey, ). ..

    Article Title: The antennal transcriptome analysis and characterizations of odorant-binding proteins in Megachile saussurei (Hymenoptera, Megachilidae).
    Article Snippet: .. The expression level of each unigene was calculated by RSEM software (RNA-Seq by Expectation Maximization) with default parameters and presented as FPKM (fragments per kilobase of transcript per million mapped fragments) values. ..



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